DEVELOPING AI-DESIGNED LIPID NANOPARTICLES FOR TARGETED MRNA DELIVERY TO MODULATE SPECIFIC IMMUNE CHECKPOINTS IN SOLID TUMORS

Authors

  • Anam Ali Southern Punjab Institute of Health Sciences (SPIHS), Multan, Pakistan. Author
  • Amna Javed Health Services Academy, Islamabad, Pakistan. Author
  • Muhammad Azhar Sherkheli Abbottabad University of Science and Technology, Abbottabad, Pakistan. Author
  • Bakhat Zameen Khawaja Muhammad Safdar Medical College (KMSMC), Sialkot, Pakistan. Author
  • Zuheeb Ahmed Shah Abdul Latif University, Khairpur, Pakistan. Author
  • Zeeshan Ali University of Sialkot, Sialkot, Pakistan. Author https://orcid.org/0009-0004-9637-306X
  • Abdul Rehman University of Okara, Okara, Pakistan. Author

DOI:

https://doi.org/10.71000/bjzpn396

Keywords:

Drug Delivery Systems, Immune Checkpoint Inhibitors, Lipid Nanoparticles, , Machine Learning, Messenger RNA, Nanomedicine, Solid Tumor. 

Abstract

Background: Targeted delivery of messenger RNA (mRNA) to modulate immune checkpoints has emerged as a promising approach in cancer immunotherapy. However, the clinical translation of mRNA therapeutics remains limited by challenges in delivery efficiency, specificity, and immunogenicity. Lipid nanoparticles (LNPs) offer a viable solution, yet their design is often empirical and lacks predictive optimization.

Objective: To develop a predictive model that optimizes LNP design for efficient and selective mRNA delivery to solid tumors, minimizing off-target effects and maximizing immune checkpoint modulation.

Methods: A descriptive, simulation-based study was conducted over four months in South Punjab. A total of 1,000 LNP formulations were generated, varying in particle size, zeta potential, PEG density, and ligand modification. Machine learning algorithms—including Random Forest, Gradient Boosting, and Support Vector Regression—were trained on simulated datasets using Python-based libraries. Delivery efficiency, off-target index, immunogenicity score, and mRNA expression duration were used as primary outcome variables. Statistical analyses were performed assuming normal distribution, including ANOVA, multivariate regression, and cross-validation.

Results: Mean delivery efficiency was 75.4% ± 10.2%, with ligand-modified LNPs achieving significantly higher efficiency (up to 80.6%) and reduced off-target indices (as low as 0.18). Zeta potential and PEG density were strongly predictive of performance. Immunogenicity scores remained within acceptable limits, while mRNA expression duration exceeded 60 hours in optimized formulations. The predictive model demonstrated high accuracy and interpretability in forecasting LNP behavior.

Conclusion: The study successfully demonstrated that AI-based predictive modeling can rationalize LNP design for targeted mRNA immunotherapy. This approach enhances delivery outcomes while minimizing systemic risks, offering a scalable strategy for advancing precision nanomedicine in oncology.

Author Biographies

  • Anam Ali, Southern Punjab Institute of Health Sciences (SPIHS), Multan, Pakistan.

    Assistant Professor, Southern Punjab Institute of Health Sciences (SPIHS), Multan, Pakistan.

  • Amna Javed, Health Services Academy, Islamabad, Pakistan.

    MSPH, Health Services Academy, Islamabad, Pakistan.

  • Muhammad Azhar Sherkheli, Abbottabad University of Science and Technology, Abbottabad, Pakistan.

    Professor, Abbottabad University of Science and Technology, Abbottabad, Pakistan.

  • Bakhat Zameen, Khawaja Muhammad Safdar Medical College (KMSMC), Sialkot, Pakistan.

    2nd Year MBBS Student, Khawaja Muhammad Safdar Medical College (KMSMC), Sialkot, Pakistan.

  • Zuheeb Ahmed, Shah Abdul Latif University, Khairpur, Pakistan.

    Assistant Professor, Department of Pharmacy, Shah Abdul Latif University, Khairpur, Pakistan.

  • Zeeshan Ali, University of Sialkot, Sialkot, Pakistan.

    University of Sialkot, Sialkot, Pakistan.

  • Abdul Rehman, University of Okara, Okara, Pakistan.

    Student, Department of Bioinformatics, University of Okara, Okara, Pakistan.

References

Fernandes S, Cassani M, Cavalieri F, Forte G, Caruso FJAS. Emerging Strategies for Immunotherapy of Solid Tumors Using Lipid‐Based Nanoparticles. 2024;11(8):2305769.

Bhujel R, Enkmann V, Burgstaller H, Maharjan RJP. Artificial Intelligence-Driven Strategies for Targeted Delivery and Enhanced Stability of RNA-Based Lipid Nanoparticle Cancer Vaccines. 2025;17(8):992.

Zhou F, Huang L, Li S, Yang W, Chen F, Cai Z, et al., editors. From structural design to delivery: mRNA therapeutics for cancer immunotherapy. Exploration; 2024: Wiley Online Library.

Kim J, Lee BJ, Moon S, Lee H, Lee J, Kim B-S, et al. Strategies to overcome hurdles in cancer immunotherapy. 2024;28:0080.

Imani S, Li X, Chen K, Maghsoudloo M, Jabbarzadeh Kaboli P, Hashemi M, et al. Computational biology and artificial intelligence in mRNA vaccine design for cancer immunotherapy. 2025;14:1501010.

Fallatah MM, Alradwan I, Alfayez N, Aodah AH, Alkhrayef M, Majrashi M, et al. Nanoparticles for Cancer Immunotherapy: Innovations and Challenges. 2025;18(8):1086.

Alamri AM, Assiri AA, Khan B, Khan NUJMO. Next-generation oncology: integrative therapeutic frontiers at the crossroads of precision genomics, immuno-engineering, and tumor microenvironment modulation. 2025;42(11):1-20.

Sui Y, Hou X, Zhang J, Hong X, Wang H, Xiao Y, et al. Lipid nanoparticle-mediated targeted mRNA delivery and its application in cancer therapy. 2025.

Kon E, Ad-El N, Hazan-Halevy I, Stotsky-Oterin L, Peer DJNrco. Targeting cancer with mRNA–lipid nanoparticles: key considerations and future prospects. 2023;20(11):739-54.

Gao Y, Yang L, Li Z, Peng X, Li HJBr. mRNA vaccines in tumor targeted therapy: Mechanism, clinical application, and development trends. 2024;12(1):93.

Muhammad I, Ren K, Shen B, Zhou F, Tian L, Liu J, et al. Engineered PD-L1 nanoregulators for enhanced tumor immunotherapy. 2025.

Magoola M, Niazi SKJC. Current Progress and Future Perspectives of RNA-Based Cancer Vaccines: A 2025 Update. 2025;17(11):1882.

Hanafy BI, Munson MJ, Soundararajan R, Pereira S, Gallud A, Sanaullah SM, et al. Advancing Cellular‐Specific Delivery: Machine Learning Insights into Lipid Nanoparticles Design and Cellular Tropism. 2025:2500383.

Amoako K, Mokhammad A, Malik A, Yesudasan S, Wheba A, Olagunju O, et al. Enhancing nucleic acid delivery by the integration of artificial intelligence into lipid nanoparticle formulation. 2025;7:1591119.

Wang Q, Liu Y, Li C, Xu B, Xu S, Liu BJAS. Machine Learning‐Enhanced Nanoparticle Design for Precision Cancer Drug Delivery. 2025:e03138.

Gomerdinger VF, Nabar N, Hammond PTJNRC. Advancing engineering design strategies for targeted cancer nanomedicine. 2025:1-27.

Zwolsman R, Darwish YB, Kluza E, van Der Meel RJWIRN, Nanobiotechnology. Engineering Lipid Nanoparticles for mRNA Immunotherapy. 2025;17(2):e70007.

Meade E, Garvey MJIJoMS. Comparison of Current Immunotherapy Approaches and Novel Anti-Cancer Vaccine Modalities for Clinical Application. 2025;26(17):8307.

Khot S, Krishnaveni A, Gharat S, Momin M, Bhavsar C, Omri AJEOoDD. Innovative drug delivery strategies for targeting glioblastoma: overcoming the challenges of the tumor microenvironment. 2024;21(12):1837-57.

Alshehry Y, Liu X, Li W, Wang Q, Cole J, Zhu GJTAJ. Lipid Nanoparticles for mRNA Delivery in Cancer Immunotherapy. 2025;27(3):1-23.

Sabit H, Pawlik TM, Radwan F, Abdel-Hakeem M, Abdel-Ghany S, Wadan A-HS, et al. Precision nanomedicine: navigating the tumor microenvironment for enhanced cancer immunotherapy and targeted drug delivery. 2025;24(1):160.

Pan S, Fan R, Han B, Tong A, Guo GJTiI. The potential of mRNA vaccines in cancer nanomedicine and immunotherapy. 2024;45(1):20-31.

Wu J, Liang J, Zhang Y, Dong C, Tan D, Wang H, et al. Strategic Advances in Targeted Delivery Carriers for Therapeutic Cancer Vaccines. 2025;26(14):6879.

Zhao X, Xiong J, Li D, Zhang YJFiM. Clinical trials of nanoparticle-enhanced CAR-T and NK cell therapies in oncology: overcoming translational and clinical challenges-a mini review. 2025;12:1655693.

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Published

2025-11-18